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Quickstart

Example command lines

All data files are available in the GitHub repository under examples/.

Using sourmash tax metagenome output - summary_csv format

An example using the summary_csv format from sourmash tax metagenome (see tax metagenome docs),

taxburst examples/SRR11125891.summarized.csv \
    -o pages/SRR11125891.summarized.html

then open pages/SRR11125891.summarized.html in a browser.

Using sourmash tax annotate output

An example using the with-lineages format from sourmash tax annotate (see tax annotate docs

taxburst -F tax_annotate \
    examples/SRR11125891.t0.gather.with-lineages.csv \
    -o pages/SRR11125891.tax_annotate.html

then open pages/SRR11125891.tax_annotate.html in a browser.

Using singleM pipe output

An example using the profile format from singlem pipe (see singlem pipe docs):

taxburst -F singleM \
    examples/SRR11125891.singleM.profile.tsv \
    -o pages/SRR11125891.singleM.html

then open pages/SRR11125891.singleM.html in a browser.